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Saturday, 27 February 2021

Phenylboronic Acid: A Functional Tag to Enable Simple Removal of Excess Reagent or Coproduct using Chromotropic Acid

Chromotropic Acid for Extracting Boronates


The KiloMentor Blog articles emphasize ways to make the workup, separation, and purification of the product from organic reactions more cost-effective. Often this is enabled by phase switching methods that quickly take the desired material into one bulk phase and byproducts, coproduces, and the processing chemicals into another.


One way to dot this is to use a reagent or coreactant that has built into its structure some functionality that allows it to be subsequently extracted into an aqueous phase. 1-(3-Dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride is an example of such a reagent. The pendant dimethylamino functional group makes an excess reagent or coproduce or byproduct basic and so soluble in aqueous acid.


A functional fragment that can be used in this way but has rarely been adopted is the p-dihydroxy-boryl benzyl function.  This substructure appears in the Dobz protecting group for peptide synthesis [D.S. Kemp and David C. Roberts, Tet. Lett. 52, 4629-4632, 1975]. The dihydroxyboryl group forms a strong covalent linkage with the sodium salt of chromotropic acid [1,8-dihydroxynaphthalene-3,6-disulfonic acid] which is very soluble in water.


In the absence of complexing species, boronic acids are in reversible equilibrium with their cyclic trimers and water. Other species containing the group may be partially converted to Boronic anhydrides.


Although many reactions can be conducted in the presence of the free Boronic acid function  as a second option the Boronic acid can itself be protected as the N-methyldiethanolamine complex. N-methylethanolamine is of course itself readily taken into water in a workup. 


Wednesday, 17 February 2021

The Upper Critical Solution Temperature (UCST) between Acetonitrile and Water



I have always been unsure of the behaviour of mixtures of acetonitrile and water. In some places it is lauded for the usefulness of liquid-liquid partitioning between the two of them while I also see plenty of recrystallizations from homogeneous mixtures of acetonitrile and water. 


Recently in an old US Pat. 4,954,260 filed in 1989 I found the linking piece of data. Water and acetonitrile have an upper critical solution temperature (UCST) of -0.4 C. That is to say below -0.4 C they are generally immiscible  That is to say the two phases each contain both ingredients but they do give two liquid phases. Above this temperature, they constitute a single homogeneous phase. Thus, if you try a recrystallization by heating a mixture of acetonitrile and water you will be working with a homogeneous liquid and even if you cool the solution in ice there will still be one liquid phase.


Friday, 5 February 2021

Good Reasons for Solvent Mixtures for Chemical Reactions?

 



Why do process chemists regularly optimize a chemical step using only a single reaction solvent? Neal G. Anderson in his valuable text, Practical Process Research & Development, dedicates an entire chapter to solvent selection; however, all that he says about using mixtures of solvents is “Sometimes a mixture of solvents will dissolve a compound much better than any one solvent .....” Rather obliquely, regarding the goal of solvent selection, he writes, “[Other] important considerations are to decrease waste and allow for efficient solvent recovery and reuse.”


Although purifying and recycling solvent is almost certainly easier if it is a single substance; generally, in the fine chemical industries, including making pharmaceuticals and pharmaceutical intermediates, solvents are not reused. The exception would be some product that achieves a massive volume. Thus, it might make sense for the owner of a composition of matter patent for a major pharmaceutical to use a single-component solvent so that solvent recovery would be simpler if that product became a blockbuster drug. 


The reason recycling is rare is economic. In a multipurpose plant, batch sizes are too small and the number of different solvents used is too many to make it worthwhile accumulating and storing used solvents for delivery to a solvent recycling specialist. As for purifying solvents themselves, the reactors in a multipurpose plant are too costly to be used for solvent recycling. Finally, recycling solvent within a fine chemical facility would only be acceptable so long as the same strict specifications could be met for recycled solvent as for other input reactants and this testing brings its own costly analytical burden.


My conclusion: most of the time using mixtures of solvents as the reaction medium is just as practical as using a single solvent. That is despite the almost universal traditional practice of using a single component solvent without asking the reason why it must be so. 


Let us examine some of the reasons solvent mixtures could be advantageous.


Throughput

A solvent mixture may well dissolve more substrate per liter than any single component medium can. Getting more substrate dissolved homogeneously in a reactor can improve the economics by increasing throughput, especially in early process steps which need to be run multiple times. (Solubility is the single advantage that Neal Anderson did mention.)


Cost

One particular solvent may possess a specially advantageous property while, at the same time, being prohibitively expensive. Using a mixture of this expensive solvent and a cheaper cosolvent may adequately preserve the special property while reducing the overall cost.

 

Increasing the Heat Capacity

The preferred solvent for yield optimization may be one that boils substantially above the best reaction temperature. Adding a co-solvent that boils at the desired reaction temperature can increase the heat capacity of the medium at the reaction temperature. The lower boiling solvent’s vaporization into the condenser and the returning condensate will stabilize the reactor temperature. Consequently, the addition rates of reactants can be higher without overshooting the optimum reaction temperature.


Changing a Phase’s Density

Some solvents are more dense, and some less dense than water.  In work-ups with water, sometimes having the product-containing liquid phase more or less dense than water can have an advantage. There can be fewer transfers between vessels. The number of large vessels needed to execute a process step may depend upon it. Processing times can be reduced and throughput increased. Fewer vessels mean less cleaning and a smaller burden on plant facilities.


Reducing the Solubility of a Product or Co-product

Decreasing the solubility of a product or co-product can cause it to precipitate as the reaction proceeds. This can drive an equilibrium towards completion, simplify isolation or raise the overall yield.


Making Telescoping Reactions Easier

Sometimes it is not useful to isolate a process intermediate but the solvents appropriate for the present and subsequent process steps are not the same. A solvent switch is required. Evaporation to dryness is not possible at scale. It would be advantageous if the second step in the telescoped pair was optimized in a solvent mixture consisting of a minor amount of the first solvent and a majority of the second solvent. If this were done it would not be required to substantially remove the first solvent. This might save substantial time and substantially reduce waste.


Because the Solvent Mixture Selected is a Constant Boiling Azeotrope

A constant boiling azeotrope has a fixed composition and it boils at a constant boiling point. In these respects, it is the same as a pure single molecular species. It can usually be purified by simple distillation. However, many azeotropes have the advantage that by changing the pressure-usually by reducing the pressure- the azeotrope can be split into its component substances for distillation. This distillation at a different pressure can potentially remove the better solvent and lead to the precipitation or crystallization of a solute.  


To Reduce Solvent Viscosity

Viscous solvents are often usefully high boiling but their viscosity is a problem for stirring and for heat conduction. Mixing with another solvent can reduce the viscosity of the reaction medium.


To Provide a Distillation Chaser

Adding a higher boiling solvent into a reaction solvent mixture can provide a chaser for reaction mixtures that are subsequently worked up by distillation. In ordinary distillation, sometimes a substantial amount of product is lost in the still pot and the distillation column. A solvent component that can act as a chaser can eliminate this loss. Of course, such a chaser could also be added after the reaction is over but before the distillation step.


Drying Simplicity 

Drying solvents at scale with inorganic salts followed by filtration of the inorganic salt hydrates uses labor, equipment, and time inefficiently.  It is greatly disfavoured for work at scale. The preferred method for solvent drying selects a solvent that forms an azeotrope with water and distills a portion of the solvent as the azeotrope. Such a solvent may usefully be part of the original reaction solvent liquid.


Raising the Freezing Point 

At what temperature does the solvent that is being considered solidify or become highly viscous? The freezing point can limit the range of temperatures that can be used in the optimization.  Lowering the temperature is often the best option for increasing the selectivity of the desired reaction versus competing reactions that produce by-products. If low temperatures create vicious reaction mixtures, these can result in hot spots during reagent additions. Inadequate mixing leads to incorrect stoichiometry, creating in turn by-products, and poor crystallization control. For example, DMSO when diluted with a small amount of toluene is more resistant to freezing and so can be cooled to a lower reaction temperature.


Wednesday, 27 January 2021

Pyridine-Water Selective Precipitation with Pyridine Recovery

 


Dissolution of a solute in a water-miscible solvent followed by crystallization or precipitation of the solute by gradual or portion-wise addition of water is an established method of separation and purification.  It is frequently applied to the separation of mixtures of different polymers.


 Solvents commonly used are methanol or ethanol. When lower alcohols are used with small molecule substrates it amounts to the same thing or at least strongly resembles crystallization from mixed alcohol-water solvent. When more expensive organic liquids are used as solvents to be practical at scale there must exist a cheap straightforward method to recover that solvent.

Pyridine is miscible with water in all proportions. It can be used to purify solutes or separate mixtures of solutes by the gradual addition of water so as to cause fractional precipitation. Typically one starts with something like a mixture of 5 parts pyridine and 1 part solute which can be warmed to dissolve what may be a solid or oily mixture; then, one gradually adds water with vigorous stirring until faint turbidity persists. At this point, optionally, a small amount of pyridine (a drop or two at the laboratory scale) can be added to just clear the haziness. Crystallization may begin after some time. In Aleksandra Smoczkiewiczowa and Jan Bielawny's paper in  P. Zakresu Towarozn. Chem.,Wysza Szk. Ekon. Poznaniu, Zesz. Nauk., Ser. 1 1970 No. 36, 149-62, it says that their cholesterol oxidation mixture was dissolved in a 5-fold amount of pyridine and by addition of water fractionally precipitated about 15% androstenolone acetate.


 Pyridine is somewhat expensive as solvents go. N
o obvious simple means to recover the pyridine when the precipitation is complete makes this an infrequently used methodology  Pure pyridine cannot be recovered by distillation because pyridine/water forms an azeotrope. Fortunately, there is a technical trick that does achieve this separation. Pyridine is not particularly soluble when sodium hydroxide is dissolved into the aqueous pyridine so the addition of enough caustic causes pyridine-water to separate into two phases. The pyridine layer can be separated and the mostly- layer discarded.

Propylene Carbonate as a Useful Solvent for Organic Synthesis Processes


Propylene carbonate has a boiling point of 242 °C. The density of propylene carbonate is 1.189 g/cc, and the dielectric constant and dipole moment, respectively, are 64.94 and 16.5.  It is a solvent that can be expected to provide good solubility for a wide range of organic reaction substrates.

Propylene carbonate may be the only solvent that is (a) usefully immiscible with water, (b) does not contain a halogen in its formula, yet (c) has a density greater than water. At 25°C the solubility of propylene carbonate in water is 8.3% and the solubility of water in propylene carbonate is 17.5%. Excess water forms a second phase on top of the water-saturated propylene carbonate. When the mixture of liquids is cooled to near 0° C the separation of phases is even greater. Thus, propylene carbonate can provide two phases that can be used for liquid-liquid extractions. Moreover, the more predominantly organic layer is the lower phase, and in a reactor can be simply cut through the bottom valve. Thus, when the product can be taken into the aqueous phase by acid or base, the organic phase can be removed, leaving the product in the reactor. This can save a vessel in a chemical process work-up.

 In fact, propylene carbonate is thermotropic with appropriate water mixtures. As the temperature is varied between 0 and 61°C, the two phases that derive from a particular weight fraction of propylene carbonate and water change compositions. It would therefore be expected that the partitioning of a mixture of substrates, such as might be the products from a reaction step,  could be optimized between the two phases both by varying the propylene carbonate/water weight fraction and by changing the temperature of the two-phase mixture. The UCST for propylene carbonate and water is about 72 C. At this temperature, only a single distinct, clear phase remains


Propylene carbonate can be hydrolyzed by both aqueous acid and aqueous base. There are both good and bad aspects to this. The bad news is that the stability of the solvent in contact with water is 


somewhat limited. This, however, is also true of ethyl acetate, where it is not regarded as a severe limitation. The good part is that small amounts of the solvent mixed with a hydrolytically stable cosolvent can be removed by hydrolysis since the products, carbon dioxide and propylene glycol, are both water-soluble.

Thursday, 10 December 2020

Reaction Solvents that could be Worked-Up with Acetic Anhydride



Solvents that could be distilled away from acetic anhydride (bp. 140 C) and taken up into any solvent immiscible with acetic acid, after the hydrolysis of the acetic anhydride chaser and admixture with a little additional water to enhance immiscibility of the two layers:


Chlorobenzene

Nitro propane

Methyl chloroacetate

Cyclopentanone

Diethyl carbonate

Dimethyl sulphite

Tetrachloroethylene

2-nitropropane

Methylisobutyl ketone

N-methylmorphiline

Nitromethane

Toluene

1,1,2-trichloroethane

Trifluorotoluene

1,4-dioxane

Nitromethane

Methylcyclohexane

Heptane 

Propionitrile

Dibromomethane

Dimethylcarbonate 

Trichloroethylene

Isopropyl acetate

1,2-dimethoxyethane

Fluorobenzene

1,2-diethoxyethane

1,2-dichloroethane

Cyclohexane

Acetonitrile

Cyclohexane

Benzene

methylethylketone 

2-methyltetrahydrofuran

Ethyl acetate 

Butyl chloride

Carbon tetrachloride

Petroleum ether

Hexane

Diisopropyl ether

Chloroform

Perfluorohexane

1,1-dichloroethane

Methyl acetate

Carbon disulphide

Dimethoxymethane

Pentane 

Diethyl ether

Methyl t-butyl ether


Wednesday, 9 December 2020

Organic Solvents and Various Means for their Removal

 

Co-distillation


If two liquids are essentially immiscible, distillate comes over when the sum of their vapor pressures equals the pressure inside the distillation apparatus. The effect is that a small amount of a high boiling material will co-distill along with a larger amount of a lower boiling material. So long as the low boiling material is inexpensive and the higher boiling material is easily separable from this large amount of low boiler, co-distillation can physically separate the high boiler from less volatile or non volatile  components mixed with it. Aside from using water (which is classified below as steam distillation), the inexpensive material most frequently used in a co-distillation is kerosene/paraffin/lamp oil/coal oil. Much less frequently silicone oil (dimethicone KF-96L-2cs) has been used as the high boiling component.


Steam Distillation


Steam distillation represents the particular case of co-distillation using water. Many higher boiling solvents can be chased by steam distillation. Nitrobenzene and 1,1,2,2-tetrachloroethane are frequently removed this way after Friedel-Craft reaction. The steam can be preheated to temperatures above 100 C thereby co-distilling a larger portion of the lower boiling material while minimizing the volume of water. Codistillation including steam distillation can also be done under vacuum so that the material of interest is not exposed to as much heat.



Reversible Degradation


Some special compounds can be used as solvents that are reversibly cracked into smaller more volatile fragments by heating. Piperylene sulfone has solvent characteristics very similar to tetramethylene sulfone. The essential difference for our consideration here is that the former is fragmented by heat into  1,3-pentadiene and sulfur dioxide. These can be trapped together as a distillate whereupon they reform piperylene sulfone.

  Likewise, dicyclopentadiene upon heating can disaggregate into the monomeric cyclopentadiene and be distilled out of a reactor and away from less-volatile products.

Hydroxymethanesulfonic acid is a strong acid solvent that upon heating breaks apart into formaldehyde, water, and sulfur dioxide before reforming when they are recondensed together. 


Degradation


Some solvents can be hydrolyzed into water-soluble fragments.

 

Acetic anhydride can be hydrolyzed into acetic acid.

 

Dimethylformamide can be hydrolyzed by acid into dimethylamine and formic acid.

 

Dimethylacetamide can be hydrolyzed into acetic acid and dimethylamine.

 

Propylene carbonate can be hydrolyzed into 1,2-propanediol and carbon dioxide.