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Sunday 18 August 2019

Digestion or Trituration by themselves or combined with Adsorption on an Inert Solid Support




The terms digestion and trituration seem to be used interchangeably by many chemists. In my KiloMentor articles, I consider digestion to be hot trituration.

Trituration

Pure hydrocarbons are used frequently for trituration because in the cold they dissolve much less of most products compared to more polar organic solvents yet they can substantially reduce impurities that are present in small amounts. Thus digestion with hydrocarbon solvents can be used for initial purification of a crude mixture, so long as it is not an oil. If it is an oil, trituration may still succeed so long as enough hydrocarbon triturant is used so that any liquid impurity is only a small portion of the liquid phase.

A rule of thumb might be to triturate mixtures of high molecular weight compounds and distill or co-distill low molecular weight ones before trying to crystallize either one.

The purity of solvents used in crystallization is important because solvent impurities, even other solvents, can retard the rates of both crystal nucleation and crystal growth just like other higher molecular weight reaction impurities can. Because solvent changes on scale are done by solvent exchange rather than by evaporation to dryness and replacement with the new solvent, on scale the residue of the first solvent can be more substantial than one would experience in the laboratory.

Besides the physical property difference between homologous alcohol solvents: methanol, ethanol, propanol, etc., process chemists might be wise to keep in mind that only ethanol has denaturants added to make the ethanol unsuitable for beverages. These denaturants are different for different grades and can interfere with the crystallization kinetics.

Water is the most omnipresent impurity in crystallizations, so much so that in many cases efforts to work free of it are doomed to failure. Poly-hydroxyl compounds such as sugars and glycosides are the common materials most dramatically affected by the presence of water. To illustratw, sucrose of 72% purity has been shown to crystallize twice as fast as a 70% pure sample but only one-fifteenth as fast as the pure sugar. [A. R. Nees and E.H. Hungerford, Ind. Eng. Chem., 28, 893 (1936)].
Water frequently forms a solvate with a compound of interest and this can be helpful, or not, depending upon the properties sought.
Digestion

Digestion is hot trituration with the minimum amount of a poor solvent required to cover a crude solid and make it stirrable. Digestion as a purification method at scale requires some means to obtain an initial crude solid without evaporation to dryness.  Digestion is typically done by refluxing the liquid making up the slurry in order to equilibrate the impurities with the solvent.
In addition to water and saturated hydrocarbon as liquids likely to dissolve only a small amount of the main product in a trituration or digestion, the following azeotropic mixtures, which are either hydrocarbon or water-rich, are suggested. None have been tested.

97.0% water 3.0% acetic acid azeotrope bp 76.6 C
91.0% water 9.0% Benzyl alcohol azeotrope bp 99.9ºC
87.1%heptane 12.9% water azeotrope bp 79.2 ºC
94.4%hexane   5.6% water azeotrope bp 61.6ºC
95.5% hexane 4.5% allyl alcohol azeotrope bp 65.5ºC
97% hexane 3% 1-butanol azeotrope bp 67.0ºC
91.5% Cyclohexane  8.5% water azeotrope bp 69.8ºC
83.7% acetonitrile 16.3% water azeotrope bp 76.5 C
72.9% Allyl alcohol 27.1% water azeotrope bp 88.2ºC
66% Allyl cyanide  34% water azeotrope bp 89.4ºC
77.5% Formic acid 22.5% water azeotrope bp 107.1ºC

Digestion from an Inert Support

KiloMentor has already written about direct isolation on a solid support.

An idea that synthetic organic chemists have apparently not considered up until now is the evaporation of a reaction mixture onto an inert solid material from which byproducts can be digested away using poor solvents followed by dissolving the main product with a good solvent and filtering away from the inert solid support material.  One possible reason for this is that synthetic chemists are not familiar with the properties of pharmaceutically acceptable supports that could be used as the inert material for such evaporations.

The inert solids can be pharmaceutically acceptable tablet excipients such as microcrystalline cellulose, crospovidone, cross-linked polystyrene, calcium sulfate, calcium carbonate, calcium phosphate. They could be heated and stirred to just above the temperature of the solvent in which the reaction mixture is dissolved and the solution of the reaction mixture added to it.
The solvent would be expected to flash distill out of the reactor and could be collected for destruction or reuse.  The method would have a particular advantage in that it could be used for recovering dipolar aprotic solvents which are more difficult to remove.

Similar things have been done. Evaporation of a solution of a reaction mixture onto chromatography media such as silica or alumina has been done to prepare a concentrated band of material that can be spread on the top of a chromatographic column to be eluted with a series of increasingly polar solvents. 

Treatment of a solution of a crude reaction mixture with charcoal has often been done to remove small amounts of non-polar high molecular weight impurities. A paper has been published that illustrates the work-up of a chromic acid oxidation by pouring the crude reaction mixture onto a column of cross-linked, unfunctionalized polystyrene and eluting the column with methanol-water mixtures to remove first the inorganic salts and then the organic products. In this process, the solvent of the reaction mixture is simply diluted with the methanol-water eluate.
In the slightly different process, I am contemplating. The reaction mixture would be added to stirred, warm, cross-linked polystyrene so that the reaction solvent evaporates and leaves the crude product in the solid resin. Then the inorganic components would be removed by digestion or trituration with methanol/water mixtures. Thereafter, the organic compounds would be eluted with a less polar solvent mixture.

Since charcoal has been used as an additive to consume excess oxidant, the first step after reaction completion could be treatment with a small amount of charcoal and filtration followed by evaporation onto free flowing non-functionalized cross-linked polystyrene.

If we can obtain the crude solid solvent-free, we can also adopt the other digestion technologies using poor solvents for the principle product.

Evaporation of a reaction mixture onto a solid polymer is one means to evaporate to dryness; something that cannot be done on-scale in a large stirred reactor.

Thursday 8 August 2019

In Process Controls and Forensic Samples in Chemical Process Development


A pharmaceutical process that has been scaled-up is monitored using the results of in-process controls.  These are tests that, for a particular run, either conform or do not conform to a pre-set limit. If the test conforms, the operators proceed to the next instruction in the batch process, but if the result is nonconforming, the result is reported to the manager who decides what action to take next.  For an in-process test, the actions to be taken are characteristically thought out in advance.  If there is no possible corrective action for an out of specification result, the test is not a proper in-process test but rather just a datum that may be part of the analysis of the result when the final outcome is known.

When a process has been 'optimized', it is taken for granted that it will operate within its control limits and no testing beyond its in-process ones will be required to guide the operators to a successful result.

Pilot Plant Experiments and Forensic Testing.

Although the chemical plant or kilo-lab process can be modelled using a laboratory scale procedure, it cannot be optimized without results from representative samples from the scaled-up process taken at critical decision points in the process.

The pilot plant runs are still experiments, even if the equipment is handled by personnel who are not research chemists.  Although the chemist may think that (s)he understands, for practical purposes, the experimental reaction and subsequent purifications steps being scaled-up, this is at least immodest and usually foolish.  The experimenter is wisest who anticipates the most potential problems and in the beginning collects samples at every convenient sampling point when the process is executed on scale.  That means taking many more samples than simply those which will remain mandatory for in-process control.  These extra samples we will call forensic samples because they are very often only analyzed when the result is disappointing in some respect. These samples can determine what went wrong and how to correct it.

Forensic samples are carefully stored so they will not deteriorate. Forensic samples are not analyzed while the process is running, but are for retrospective testing by the process chemists and may never be looked at if the process runs without any deviation.  

There is only one downside to the collection of forensic samples.  If the process runs perfectly and gives a product of the exact same quality as the laboratory samples but with a lower yield, the question may arises whether these samples could be predominantly responsible for the reduced yield.  Most often the size of the samples or the mechanical losses that can occur when taking forensic samples cannot explain a noticeable reduced yield on scale.  The samples are typically just not large enough compared to the size of the process. Simple calculations, in most cases, will give a pretty good idea how much yield could have been lost through this extras sampling.

Almost without exception the forensic sampling will provide an improved opportunity to understand what has caused any deviation from the desired result.

Thorough forensic sampling examines not just the physical phases where you expect the product to predominantly reside. Samples of the waste solids and liquids can also be valuable. Filtrates, wash liquids, filter cakes and head space gases may reveal where, for example, the missing product has vanished.

Once the process is set, these forensic tests should be removed from the batch instructions. The only tests that should remain in an optimized batch sheet are the in-process tests that are done at the decision points.

Sampling Problems

Obtaining a truly representative sample from a large reactor presents more difficulties than laboratory sampling. For safety reasons, plant samples must be taken without opening the reactor. Most often a dip-tube that runs many meters down into the reactor is used and the sample is removed by suction. There is no way to verify how effective the cleaning between samples is nor is there any way to guarantee that stratification or gradient has not been created in the sampling line. 

Samples that are likely to contain unstable species need to be adequately quenched before labelling and storing them. Samples of distillates, filtrates, washings, and recovered processing solids are easier to handle. 

Monday 5 August 2019

Emulsifiers, Detergents, and Surfactants in Green Synthesis



Cetyltrimethyl ammonium bromide.svg
Cetyl trimethyl ammonium bromide- A Detergent


As part of the increased popularity of ‘green chemistry’, many persons have considered doing organic chemical synthesis using water as solvent. This may be a good idea or it may be simplistic. Using water avoids organic solvents, but even when there are only small amounts of dissolved or entrained organics, cleaning up waste water so that it can be sent to sewage is neither simple nor green. Destroying water by combustion is expensive. Whatever the outcome of this controversy, detergents, emulsifiers or surfactants, whatever you choose to call them, can cause homogeneous, bulk water to hold substantial amounts of lipophilic materials. Chemicals can react in such media, sometimes with rate accelerations. It is not clear whether these accelerations are caused principally by miscelle formation or phase transfer catalysis or some combination of the two.  

Generally the presence of these amphiphilic substances makes isolation procedures more difficult, because chemical separation at the molecular level is achieved by phase separation at the macroscopic level and an emulsifying agent makes the two most common immiscible liquid phases oil and water, more miscible; therefore, it seems necessary that the surfactant should be destructible so that it loses its ability to emulsify once the reaction is complete and before the separation phase of the process is begun.

An article by F.M. Menger, J.U. Rhee and H.K. Rhee published [J. Org.Chem., 40, 3803 (1975)] is one of the early preliminary explorations. In one experiment, they compared the oxidation of piperonal, mp 36 C, using potassium permanganate in water at 55C, with and without 0.01M cetyltrimethylammonium bromide.  The authors observed about 33-37% yield without surfactant and 64-74% yield with surfactant.  Surprisingly, the yield appeared to be independent of the reaction time; whether 70, 100 and 150 minutes was used.  This was not further explored even though the authors were aware that in Organic Synthesis Coll. Vol. II this same reaction had been done without emulsifier at 80C but with vigorous agitation of the water and molten piperonal phases giving a 97% yield. It may have been that the permanganate was degrading as the reaction proceeded and the oxidizing capacity was over after 70 minutes or less. Another complicating possibility is that at the reaction temperature the permanganate also attacks the bromide in the cetyltrimethyl ammonium salt.  The permanganate could oxidize bromide to bromine and this could in turn brominate the piperonal leading to brominated by-products. This latter suggestion is supported by the fact that in one of two runs of 70 minutes duration, where the emulsifier was mixed with the room temperature potassium permanganate and water and added dropwise to the warm piperonal solution, a yield of 74% was achieved compared to 66% when the emulsifier was all placed completely in the hot water and piperonal mixture before starting to add oxidant.

These authors noted that the time saved from the increased reaction rate with emulsifier present was spent in the extended time needed to get phase separation in the extractive isolation. The experimental portion of the article states that when surfactant was present, 2 hours were allowed for phase separation.

In another trial of the methodology, α,α,α-trichlorotoluene was hydrolyzed by 20% aqueous sodium hydroxide at 80C.  Using 0.01M cetyltrimethylammonium bromide the reaction gave a 98% yield in 1.5 hours while without catalyst there was zero yield.  In this reaction, the non-ionic block polymer emulsifier  Brij 35 [C12H35(OCH2CH2)23OH ] reduced the time to 11 hours for a 97% yield. No detergent such as sodium lauryl sulphate was tried in these reactions.

David Jaeger worked on this possibility in the 1980s 
Jaeger, D.A.; and Frey, M.R., J. Org. Chem. 47, 311 (1982).
Jaeger, D.A. and Ward, M.D. J. Org. Chem. 47, 2221 (1982). 
Jaeger, D.A. and, Martin, C.A. and Golich, T.G. ????
Craig, A. Timothy G. Golich and David A Jaeger, J. of Colloid and Interfacial Science, 99, 561 (1984).

In reaction using a cleavable surfactant, the type of surfactant and the reagent and conditions for cleavage need to be selected in advance so that the product is inert. 

It is still necessary to be able to cleanly separate the cleaved lipophilic portion of the surfactant from the hydrophobic portion.

If the hydrophilic portion is a di-quarternary ammonium salt it is a possibility that it can be precipitated as the embonate salt. This might be converted cleanly back into a more soluble quarternary ammonium species.

It is also possible, if the lipophilic portion is a straight chain alcohol, it might be separated as a urea complex by crystallizing the complex out from a mixture of urea and methanol.


This problem has been approached in a different aspect by persons who were asking how long chain quarternary ammonium salts could be metabolized.  In these cases the long chain amphiphile was interrupted by an ester which under physiological conditions could be hydrolyzed.

NOTE: This blog article was started at least forty years ago so there is a lot of literature not taken into consideration.  It is probably pertinent whether any degradable emulsifiers are now commercial.