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Thursday 23 February 2017

A Practical Scheme for Working Up a Reaction Mixture based upon real Liquid-Liquid Extraction Possibilities and Logical Solubility Testing





General schemes have been devised for examining unknown mixtures such as those one learns as an undergraduate chemist for a laboratory examination; such schemes as those in the classic text by Shriner, [Fuson and Curtin, [The Systematic Identification of Organic Compounds: A Laboratory Manual. Fifth Edition John Wiley & Son 1964]. The more complex of these schemes to the best of my knowledge, no matter what their wisdom, have never been adopted by real chemists to work up real reaction mixtures.  The reason is simple. These schemes are designed to handle complete unknowns. The bench chemist always knows something about his mixture, even if it is no more than the fervent hope that a particular product will be present; therefore, the working chemist or chemical engineer is in a more knowledgeable position and so the protocol for a completely unknown mixture is going to be inefficient.

At least the functional groups and molecular weight of the desired product will be known and some educated guesses can be made about the likely physical properties, and so a theoretical proposal can be made for a rational separation.  For example, if the hoped-for product is a neutral lipophilic aldehyde, a mild aq. acid extraction and a mild aq. base extraction can be applied to an ether solution. Then some aldehyde-specific reagents such as bisulfite or Girard’s P or T can be contemplated.

These classical schemes would also be set aside because they apply simple solubility tests in carbon tetrachloride and benzene, which today are unacceptably toxic solvents.

What would be more interesting and have more likelihood of application would be a scheme that can be adapted to estimated properties of a particular reaction mixture and which have consistency with the most helpful procedures for separations at scale.

To explore this, let us assume first that the reactor contents, at the end of the reaction period, is homogeneous and the TLC or other in-process check is encouraging.  Let us also assume that the trial reaction has been conducted on a scale of at least several grams. I make this assumption first because improving the throughput in a series of reactions in a process scheme should focus on the early steps and these are the ones using the less expensive materials. 

If the reaction flask contents are not homogeneous, the phases should be separated and treated separately.  This practice is based on the wise rule that the chemist should never refuse a phase separation offered by nature in the course of working out a complete separation. Specifically, if there is a solid in a liquid, filter the solid, and retain the filtrate. If there are two liquids, cut the phases and examine each. Such natural separations are not likely to be quantitative recoveries of any component, but the constitution of the phases may provide a guide to a modification that delivers a quantitative separation.

Supposing then that the phase is a single one, or that we are examining multiply phases separately, the chemist has a very good idea that the main constituent of this phase is solvent and the solvent is known.  The object will be to remove that solvent completely without exposing the other constituents to conditions so severe that they may degrade.  The chemist is the best judge of how to achieve this.  

Let us suppose now that the solvent has been removed under mild conditions and the residue, either as an oil, a mixture of solid and liquid, or a glass is ready to be examined.

It is not possible to efficiently separate viscous oil from a solid. In this situation, oil and solid probably must be examined together although again this is a situation where the chemist’s powers of observation and judgment are more useful than any rule that can be offered by me out of the blue.

The mixture will be examined with respect to its solubility properties much as in the classic approach in Shriner Fuson and Curtin but here the solvents are chosen based on a different principle.  The solvents, which will be examined, are hexane, acetonitrile, methanol, and ethyl ether.

The first three solvents are chosen because methanol and hexane in the presence of a few percents of water give two immiscible phases as does the combination of acetonitrile and hexane.  As a consequence, differential solubility information can not only direct us to a trituration step but possibly to a partitioning between two immiscible solvents.
The tests in diethyl ether are more standard. Although diethyl ether is not a solvent acceptable in a general-purpose chemical plant, its remarkable ability not to form emulsions makes it irreplaceable for initial exploratory acid and basic aqueous extraction tests.

So, in practice, one gram of the mixture is placed in a small r.b. flask and treated with 7 ml of methanol and swirled.  If any solid remains undissolved the slurry can be cooled in ice to maximize the quantity of solid, filtered cold, and washed with a little cold methanol. That solid is examined.

If there is no solid in the solution we could add 7 ml/gm of hexane(s) and mix the phases together.  Again we look for any solid, which might separate and treat it appropriately. If two immiscible liquid layers are not present a drop or two of water is added to cause a methanol layer to separate.  The two phases are separated and each is evaporated to dryness, pumped under vacuum, and weighed.  Each phase should be examined, if it is convenient, by the analytic method that was used for the reaction’s in-process check. The combination of the weights obtained and the analyses of the separate layers are useful properties of the mixture.  They may provide the first hints of the most efficient methods of isolation. If one phase or the other contains essentially all the contents of the mixture all one can say is that the mixture is substantially polar or apolar, depending on which solvent it has migrated to.

If the mixture is substantially apolar take a new sample of the mixture in a small r.b. flask and tread it with 7 ml of acetonitrile and swirl, repeating the procedure that was used with methanol.  In the case of acetonitrile, water will very rarely be needed to get two liquid phases with added hexane. In fact, try to avoid using water here. The two phases are separated and each is evaporated to dryness, pumped under vacuum, and weighed.  Again each phase should be examined, if it is convenient, by the analysis that was used for the reaction’s in-process check. The combination of the weights obtained and the analyses of the separate layers again are useful properties of the mixture.  again, they may provide the first hints at the most efficient methods of isolation. If one phase or the other contains essentially all the contents of the mixture all one can say once more is that the mixture is substantially polar or apolar.

Neat water is not used in these aforementioned tests. Nevertheless, there is a good likelihood that if an inorganic salt is present it will be insoluble in one of methanol or acetonitrile and will have been filtered off.

A frequent result of this work will be that the substantial majority of the reaction mixture will remain in the hexane layer. This is to be expected. The vast majority of organic compounds are substantially lipophilic and non - crystalline when present as mixtures; nevertheless, a separation made in one of these stages may be particularly valuable.

Take a new portion of the mixture and try to dissolve it in 7 ml/g of diethyl ether. Again, if there is a solid, separate it.  Now, in the classical way, extract the diethyl ether with an equal volume of 1N aq. HCl and separate the phases. Adjust the pH of the aqueous phase back to neutrality observing any cloudiness or solid separation and then back extract the neutralized water, if this ether is murky, dry with sodium sulfate to remove the water, evaporate to dryness, and weigh.
In the same classical fashion extract the ether, which has been acid extracted with aq. base at pH about 9.0 and recovery any acidic substances that have been taken up.
Recover the neutral constituents from the residual ether.
Each phase should be examined if it is convenient by the analysis, which was used for the reaction’s in-process check. The combination of the weights obtained and the analyses of the separate layers are useful properties of the mixture.

Quite often very little more will have been accomplished than would have been achieved following the tried and true rules of thumb, but a useful number of times something really exciting and simplifying will have been drawn to your attention.

If the material, which you are seeking is either in the acidic or the basic fractions, even if it is still a serious mixture, your problems are well on their way to resolution because the means for rugged separations of such mixtures on-scale are plentiful and these ways I explore in other blog articles. See for example KiloMentor’s blog on extractive crystallization.

If the substance you are seeking still seems only to be found in the hexane or neutral diethyl ether phases more sophisticate means need to be applied.  If 30% or more of a target substance has ended up in the methanol or acetonitrile phases there is reason to hope that more intensive extractions may give you what you need.

If TLC of the methanol, acetonitrile or hexane solutions showed a substantial amount of material remaining at the origin, the presence of high molecular weight or even polymeric materials is likely.  If the mixture is strongly colored and the product sought is not expected to show color, polymer and tars are likely and the mixture should be cleaned up before looking for the desired species.  Filtering through a plug of adsorbant, which retains the origin material is usually successful.  Charcoaling a portion in an alcohol solvent often works.  Sometimes steam distillation, regular distillation, or co-distillation with a high boiling hydrocarbon can be useful. In co-distillation with kerosene be mindful that you will need to get the mixture back from the high boiling solvent!

Because cyclohexane combined with nitromethane or nitroethane or any mixture of the two, also forms two immiscible phases; the methods illustrated above can be applied in this system.  The same goes for combinations of nitromethane /nitroethane with cyclohexane and apparently cyclohexane and mixtures of dimethylformamide/dimethylacetamide. With these combinations, the temperature needs to be kept close to ambient to preserve the two-phase behavior.

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